Uses of Package
com.compomics.util.experiment.massspectrometry

Packages that use com.compomics.util.experiment.massspectrometry

Package	Description
com.compomics.util.experiment.identification	This package contains experiment classes related to identifications.
com.compomics.util.experiment.identification.identification_parameters
com.compomics.util.experiment.identification.matches	This package contains experiment classes releated to matches.
com.compomics.util.experiment.identification.psm_scoring
com.compomics.util.experiment.identification.psm_scoring.psm_scores
com.compomics.util.experiment.identification.ptm
com.compomics.util.experiment.identification.ptm.ptmscores
com.compomics.util.experiment.identification.spectrum_annotators
com.compomics.util.experiment.io.massspectrometry
com.compomics.util.experiment.massspectrometry	This package contains experiment classes related to spectra.
com.compomics.util.gui.spectrum	This package contains GUI classes related to Spectrum and Chromatogram visualization.
com.compomics.util.preferences

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.identification

Class and Description
Charge This class models a charge.
MSnSpectrum This class models an MSn spectrum.
Peak This class represents a peak.
Spectrum This class models a spectrum.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.identification.identification_parameters

Class and Description
Charge This class models a charge.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.identification.matches

Class and Description
Charge This class models a charge.
Peak This class represents a peak.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.identification.psm_scoring

Class and Description
MSnSpectrum This class models an MSn spectrum.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.identification.psm_scoring.psm_scores

Class and Description
MSnSpectrum This class models an MSn spectrum.
Precursor This class models a precursor.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.identification.ptm

Class and Description
MSnSpectrum This class models an MSn spectrum.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.identification.ptm.ptmscores

Class and Description
MSnSpectrum This class models an MSn spectrum.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.identification.spectrum_annotators

Class and Description
MSnSpectrum This class models an MSn spectrum.
Peak This class represents a peak.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.io.massspectrometry

Class and Description
MSnSpectrum This class models an MSn spectrum.
Precursor This class models a precursor.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.experiment.massspectrometry

Class and Description
Charge This class models a charge.
Peak This class represents a peak.
Precursor This class models a precursor.
Spectrum This class models a spectrum.
SpectrumFactory This factory will provide the spectra when needed.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.gui.spectrum

Class and Description
MSnSpectrum This class models an MSn spectrum.

Classes in com.compomics.util.experiment.massspectrometry used by com.compomics.util.preferences

Class and Description
SpectrumFactory This factory will provide the spectra when needed.