com.compomics.util.gui

Class VennDiagramPanel

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

com.compomics.util.gui.VennDiagramPanel

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible

public class VennDiagramPanel
extends JPanel

A panel displaying a Venn diagram based on the provided data.

Author:

Harald Barsnes.

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	VennDiagramPanel.VennDiagramType The supported Venn diagram types.

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
VennDiagramPanel(ArrayList<String> a, ArrayList<String> b, ArrayList<String> c, ArrayList<String> d, String groupA, String groupB, String groupC, String groupD, Color datasetAColor, Color datasetBColor, Color datasetCColor, Color datasetDColor) Creates a new VennDiagramPanel.

Method Summary

Methods

Modifier and Type	Method and Description
org.jfree.chart.ChartPanel	getChartPanel() Returns the chart panel.
VennDiagramPanel.VennDiagramType	getCurrentVennDiagramType() Returns the current Venn diagram type.
ArrayList<org.jfree.chart.entity.ChartEntity>	getEntitiesForPoint(int viewX, int viewY) Returns a list of the entities at the given x, y view location.
int	getFontSize() Get the font size.
int	getFontSizeLegend() Get the font size for the legend.
HashMap<String,String>	getGroupNames() Returns a standard map of the group names.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetAFourWay() Returns the legend location of dataset A in a four way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetAThreeWay() Returns the legend location of Dataset A in a three way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetBFourWay() Returns the legend location of dataset B in a four way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetBThreeWay() Returns the legend location of dataset B in a three way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetCFourWay() Returns the legend location of dataset C in a four way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetCThreeWay() Returns the legend location of dataset C in a three way Venn diagram.
no.uib.jsparklines.data.XYDataPoint	getLegendDatasetDFourWay() Returns the legend location of dataset D in a four way Venn diagram.
void	mouseClickedInChart(org.jfree.chart.ChartMouseEvent event) Handles mouse clicks in the chart panel.
void	mouseMovedInChart(org.jfree.chart.ChartMouseEvent event) Handles mouse movements in the chart panel.
void	resizePlot(int parentWidth, int parentHeight)
void	setFontSize(int fontSizeValues) Set the font size.
void	setFontSizeLegend(int fontSizeLegend) Set the font size of the legend.
void	setLegendDatasetAFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetAFourWay) Set the legend location of Dataset A in a four way Venn diagram.
void	setLegendDatasetAThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetAThreeWay) Set the legend location of Dataset A in a three way Venn diagram.
void	setLegendDatasetBFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetBFourWay) Set the legend location of Dataset B in a four way Venn diagram.
void	setLegendDatasetBThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetBThreeWay) Set the legend location of Dataset B in a three way Venn diagram.
void	setLegendDatasetCFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetCFourWay) Set the legend location of Dataset C in a four way Venn diagram.
void	setLegendDatasetCThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetCThreeWay) Set the legend location of Dataset C in a three way Venn diagram.
void	setLegendDatasetDFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetDFourWay) Set the legend location of Dataset D in a four way Venn diagram.
void	setShowLegend(boolean showLegend) Set if the legend is to be shown.
boolean	showLegend() Show the legend or not.
void	updatePlot() Update the plot.

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

VennDiagramPanel

public VennDiagramPanel(ArrayList<String> a,
                ArrayList<String> b,
                ArrayList<String> c,
                ArrayList<String> d,
                String groupA,
                String groupB,
                String groupC,
                String groupD,
                Color datasetAColor,
                Color datasetBColor,
                Color datasetCColor,
                Color datasetDColor)

Creates a new VennDiagramPanel.

Parameters:

a -

b -

c -

d -

groupA -

groupB -

groupC -

groupD -

datasetAColor -

datasetBColor -

datasetCColor -

datasetDColor -

Method Detail

updatePlot

public void updatePlot()

Update the plot.

mouseClickedInChart

public void mouseClickedInChart(org.jfree.chart.ChartMouseEvent event)

Handles mouse clicks in the chart panel.

Parameters:

event -

mouseMovedInChart

public void mouseMovedInChart(org.jfree.chart.ChartMouseEvent event)

Handles mouse movements in the chart panel.

Parameters:

event -

getEntitiesForPoint

public ArrayList<org.jfree.chart.entity.ChartEntity> getEntitiesForPoint(int viewX,
                                                                int viewY)

Returns a list of the entities at the given x, y view location.

Parameters:

viewX - the x location

viewY - the y location

Returns:

a list of the entities

getChartPanel

public org.jfree.chart.ChartPanel getChartPanel()

Returns the chart panel.

Returns:

the chart panel

getGroupNames

public HashMap<String,String> getGroupNames()

Returns a standard map of the group names. Keys: a, b, c and d.

Returns:

a standard map of the group names

getLegendDatasetAThreeWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetAThreeWay()

Returns the legend location of Dataset A in a three way Venn diagram.

Returns:

the legendDatasetAThreeWay

setLegendDatasetAThreeWay

public void setLegendDatasetAThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetAThreeWay)

Set the legend location of Dataset A in a three way Venn diagram.

Parameters:

legendDatasetAThreeWay - the legendDatasetAThreeWay to set

getLegendDatasetBThreeWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetBThreeWay()

Returns the legend location of dataset B in a three way Venn diagram.

Returns:

the legendDatasetBThreeWay

setLegendDatasetBThreeWay

public void setLegendDatasetBThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetBThreeWay)

Set the legend location of Dataset B in a three way Venn diagram.

Parameters:

legendDatasetBThreeWay - the legendDatasetBThreeWay to set

getLegendDatasetCThreeWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetCThreeWay()

Returns the legend location of dataset C in a three way Venn diagram.

Returns:

the legendDatasetCThreeWay

setLegendDatasetCThreeWay

public void setLegendDatasetCThreeWay(no.uib.jsparklines.data.XYDataPoint legendDatasetCThreeWay)

Set the legend location of Dataset C in a three way Venn diagram.

Parameters:

legendDatasetCThreeWay - the legendDatasetCThreeWay to set

getLegendDatasetAFourWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetAFourWay()

Returns the legend location of dataset A in a four way Venn diagram.

Returns:

the legendDatasetAFourWay

setLegendDatasetAFourWay

public void setLegendDatasetAFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetAFourWay)

Set the legend location of Dataset A in a four way Venn diagram.

Parameters:

legendDatasetAFourWay - the legendDatasetAFourWay to set

getLegendDatasetBFourWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetBFourWay()

Returns the legend location of dataset B in a four way Venn diagram.

Returns:

the legendDatasetBFourWay

setLegendDatasetBFourWay

public void setLegendDatasetBFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetBFourWay)

Set the legend location of Dataset B in a four way Venn diagram.

Parameters:

legendDatasetBFourWay - the legendDatasetBFourWay to set

getLegendDatasetCFourWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetCFourWay()

Returns the legend location of dataset C in a four way Venn diagram.

Returns:

the legendDatasetCFourWay

setLegendDatasetCFourWay

public void setLegendDatasetCFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetCFourWay)

Set the legend location of Dataset C in a four way Venn diagram.

Parameters:

legendDatasetCFourWay - the legendDatasetCFourWay to set

getLegendDatasetDFourWay

public no.uib.jsparklines.data.XYDataPoint getLegendDatasetDFourWay()

Returns the legend location of dataset D in a four way Venn diagram.

Returns:

the legendDatasetDFourWay

setLegendDatasetDFourWay

public void setLegendDatasetDFourWay(no.uib.jsparklines.data.XYDataPoint legendDatasetDFourWay)

Set the legend location of Dataset D in a four way Venn diagram.

Parameters:

legendDatasetDFourWay - the legendDatasetDFourWay to set

getCurrentVennDiagramType

public VennDiagramPanel.VennDiagramType getCurrentVennDiagramType()

Returns the current Venn diagram type.

Returns:

the currentVennDiagramType

resizePlot

public void resizePlot(int parentWidth,
              int parentHeight)

showLegend

public boolean showLegend()

Show the legend or not.

Returns:

show the legend or not

setShowLegend

public void setShowLegend(boolean showLegend)

Set if the legend is to be shown.

Parameters:

showLegend -

getFontSize

public int getFontSize()

Get the font size.

Returns:

the font size

setFontSize

public void setFontSize(int fontSizeValues)

Set the font size.

Parameters:

fontSizeValues -

getFontSizeLegend

public int getFontSizeLegend()

Get the font size for the legend.

Returns:

the font size for the legend

setFontSizeLegend

public void setFontSizeLegend(int fontSizeLegend)

Set the font size of the legend.

Parameters:

fontSizeLegend -