com.compomics.util.gui

Class XYPlottingDialog

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

com.compomics.util.gui.XYPlottingDialog

All Implemented Interfaces:

ExportGraphicsDialogParent, VisibleTableColumnsDialogParent, ImageObserver, MenuContainer, Serializable, Accessible, RootPaneContainer, WindowConstants

public class XYPlottingDialog
extends JDialog
implements ExportGraphicsDialogParent, VisibleTableColumnsDialogParent

A dialog that makes it straightforward to inspect compare the values of two columns in a table in a XY plot. Currently supported data types for the plots are Integer, Double, XYDataPoint and StartIndexes. For XYDataPoint the x value is used, while for StartIndexes the first index is used.

Author:

Harald Barsnes

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	XYPlottingDialog.NormalKernelDensityEstimator This class makes use of "SSJ: Stochastic Simulation in Java" library from iro.umontreal.ca to estimate probability density function of an array of double.
class	XYPlottingDialog.SelectedValuesTableFilter A filter that filters the table based on if the data point is selected in the plot or not.

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
XYPlottingDialog(Frame dialogParent, JTable table, ArrayList<String> tableToolTips, Image normalIcon, Image waitingIcon, boolean modal) Creates a new XYPlottingDialog.

Method Summary

Methods

Modifier and Type	Method and Description
void	filterTable() Filters the selected values table according to the currently selected values and the current data filters.
ArrayList<TableColumn>	getAllTableColumns() Returns all the table columns, both visible and hidden.
Vector<String>	getColummnNames() Return the column names.
HashMap<String,String>	getDataFilters() Return the data filters.
String	getDefaultExportFolder() Returns the default folder used for the export.
ArrayList<org.jfree.chart.entity.ChartEntity>	getEntitiesForPoint(int viewX, int viewY) Returns a list of the entities at the given x, y view location.
Image	getNormalIcon() Returns the normal icon.
JTable	getTable() Returns the JTable for which to hide/show the column for.
HashMap<Integer,Boolean>	getVisibleColumns() Returns the list of visible columns.
Image	getWaitingIcon() Returns the waiting icon.
void	mouseClickedInChart(org.jfree.chart.ChartMouseEvent event) Handles mouse clicks in the chart panel.
void	mouseMovedInChart(org.jfree.chart.ChartMouseEvent event) Handles mouse movements in the chart panel.
void	setDataFilters(HashMap<String,String> filters) Set the data filters.
void	setSelectedExportFolder(String selectedFolder) Set the default folder to use for exporting the graphics.
void	setVisibleColumns(HashMap<Integer,Boolean> showColumns) Sets the list of visible columns.
void	updatePlot() Update the plot.

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, setVisible, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

XYPlottingDialog

public XYPlottingDialog(Frame dialogParent,
                JTable table,
                ArrayList<String> tableToolTips,
                Image normalIcon,
                Image waitingIcon,
                boolean modal)

Creates a new XYPlottingDialog.

Parameters:

dialogParent - the dialog parent

table - the table to display the xy plot for

tableToolTips - the table tooltips

modal -

normalIcon - the normal icon for the parent dialog

waitingIcon - the icon to use when busy

Method Detail

updatePlot

public void updatePlot()

Update the plot.

mouseClickedInChart

public void mouseClickedInChart(org.jfree.chart.ChartMouseEvent event)

Handles mouse clicks in the chart panel. Selects/de-selects data points.

Parameters:

event -

mouseMovedInChart

public void mouseMovedInChart(org.jfree.chart.ChartMouseEvent event)

Handles mouse movements in the chart panel.

Parameters:

event -

filterTable

public void filterTable()

Filters the selected values table according to the currently selected values and the current data filters.

getEntitiesForPoint

public ArrayList<org.jfree.chart.entity.ChartEntity> getEntitiesForPoint(int viewX,
                                                                int viewY)

Returns a list of the entities at the given x, y view location.

Parameters:

viewX - the x location

viewY - the y location

Returns:

a list of the entities

setSelectedExportFolder

public void setSelectedExportFolder(String selectedFolder)

Description copied from interface: ExportGraphicsDialogParent

Set the default folder to use for exporting the graphics. Can be changed by the user later.

Specified by:

setSelectedExportFolder in interface ExportGraphicsDialogParent

Parameters:

selectedFolder - the default folder

getDefaultExportFolder

public String getDefaultExportFolder()

Description copied from interface: ExportGraphicsDialogParent

Returns the default folder used for the export.

Specified by:

getDefaultExportFolder in interface ExportGraphicsDialogParent

Returns:

the default folder used for the export

setVisibleColumns

public void setVisibleColumns(HashMap<Integer,Boolean> showColumns)

Description copied from interface: VisibleTableColumnsDialogParent

Sets the list of visible columns.

Specified by:

setVisibleColumns in interface VisibleTableColumnsDialogParent

Parameters:

showColumns - map of the visible columns, key: model column index

getVisibleColumns

public HashMap<Integer,Boolean> getVisibleColumns()

Description copied from interface: VisibleTableColumnsDialogParent

Returns the list of visible columns.

Specified by:

getVisibleColumns in interface VisibleTableColumnsDialogParent

Returns:

the list of visible columns, key: model column index

getTable

public JTable getTable()

Description copied from interface: VisibleTableColumnsDialogParent

Returns the JTable for which to hide/show the column for.

Specified by:

getTable in interface VisibleTableColumnsDialogParent

Returns:

the table

getAllTableColumns

public ArrayList<TableColumn> getAllTableColumns()

Description copied from interface: VisibleTableColumnsDialogParent

Returns all the table columns, both visible and hidden.

Specified by:

getAllTableColumns in interface VisibleTableColumnsDialogParent

Returns:

all the table columns

getNormalIcon

public Image getNormalIcon()

Description copied from interface: ExportGraphicsDialogParent

Returns the normal icon.

Specified by:

getNormalIcon in interface ExportGraphicsDialogParent

Returns:

the normal icon

getWaitingIcon

public Image getWaitingIcon()

Description copied from interface: ExportGraphicsDialogParent

Returns the waiting icon.

Specified by:

getWaitingIcon in interface ExportGraphicsDialogParent

Returns:

the waiting icon

getColummnNames

public Vector<String> getColummnNames()

Return the column names.

Returns:

the column names

getDataFilters

public HashMap<String,String> getDataFilters()

Return the data filters.

Returns:

the data filters

setDataFilters

public void setDataFilters(HashMap<String,String> filters)

Set the data filters.

Parameters:

filters - the filters to set