| Class | Description |
|---|---|
| AnnotationPreferences |
This class contains the spectrum annotation preferences.
|
| GenePreferences |
Contains methods for downloading gene and GO mappings.
|
| IdFilter |
This class achieves a pre-filtering of the identifications for PeptideShaker.
|
| ModificationProfile |
This class stores the information about the modification preferences (colors,
names) used for the selected project.
|
| ProcessingPreferences |
This class groups the user preferences for the initial PeptideShaker
processing.
|
| PTMScoringPreferences |
This class contains the PTM scoring preferences.
|
| UtilitiesPathPreferences |
This class sets the path preferences for the files to read/write.
|
| UtilitiesUserPreferences |
Utilities user preferences will be serialized in the user folder and provide
useful information to all compomics software, well as soon as they use it of
course.
|
| Enum | Description |
|---|---|
| UtilitiesPathPreferences.UtilitiesPathKey |
Enum of the paths which can be set in utilities.
|
Copyright © 2014. All rights reserved.