Uses of Package
com.compomics.util.protein

Packages that use com.compomics.util.protein

Package	Description
com.compomics.util.experiment.biology	This package contains experiement classes related to biological entities.
com.compomics.util.experiment.identification	This package contains experiment classes related to identifications.
com.compomics.util.general	The classes in this package focus mainly on very general, top-level tasks that are used throughout the other packages in the util section.
com.compomics.util.gui.spectrum	This package contains GUI classes related to Spectrum and Chromatogram visualization.
com.compomics.util.io	This package contains classes related to input/output.
com.compomics.util.nucleotide	The classes in this package concern useful Objects and their operations for modelling and handling nucleotides.
com.compomics.util.protein	The classes in this package concern useful Objects and their operations for modelling and handling proteins.

Classes in com.compomics.util.protein used by com.compomics.util.experiment.biology

Class and Description
Header.DatabaseType A list of the database types.

Classes in com.compomics.util.protein used by com.compomics.util.experiment.identification

Class and Description
Header This class represents the header for a Protein instance.
Header.DatabaseType A list of the database types.

Classes in com.compomics.util.protein used by com.compomics.util.general

Class and Description
MolecularFormula This class represents the molecular formula.

Classes in com.compomics.util.protein used by com.compomics.util.gui.spectrum

Class and Description
AASequenceImpl This class represents a sequence for a protein or peptide.

Classes in com.compomics.util.protein used by com.compomics.util.io

Class and Description
Enzyme This class implements the functionality for an Enzyme.

Classes in com.compomics.util.protein used by com.compomics.util.nucleotide

Class and Description
AASequenceImpl This class represents a sequence for a protein or peptide.
Header This class represents the header for a Protein instance.
Protein This class implements the behaviour for a Protein instance.

Classes in com.compomics.util.protein used by com.compomics.util.protein

Class and Description
AASequenceImpl This class represents a sequence for a protein or peptide.
Enzyme This class implements the functionality for an Enzyme.
Header This class represents the header for a Protein instance.
Header.DatabaseType A list of the database types.
ModificationTemplate This class holds a template for a Modification, meaning that it contains all shared characteristics of a Modification, but not the instance-specific one.
MolecularFormula This class represents the molecular formula.
Protein This class implements the behaviour for a Protein instance.