Package com.compomics.cli.peptide_mapper

Class MappingWorker

java.lang.Object

com.compomics.cli.peptide_mapper.MappingWorker

All Implemented Interfaces:

Runnable

public class MappingWorker
extends Object
implements Runnable

MappingWorker.

Author:

dominik.kopczynski

Field Summary

Fields

Modifier and Type	Field	Description
Exception	exception

Constructor Summary

Constructors

Constructor	Description
MappingWorker(WaitingHandlerCLIImpl waitingHandlerCLIImpl, FastaMapper peptideMapper, IdentificationParameters identificationParameters, SimpleFileReader reader, SimpleSemaphore bufferMutex, SimpleFileWriter writer, boolean peptideMapping)

Method Summary

Modifier and Type	Method	Description
String	flanking(PeptideProteinMapping peptideProteinMapping, FastaMapper peptideMapper)
void	run()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

exception

public Exception exception

Constructor Details

MappingWorker

public MappingWorker(WaitingHandlerCLIImpl waitingHandlerCLIImpl,
 FastaMapper peptideMapper,
 IdentificationParameters identificationParameters,
 SimpleFileReader reader,
 SimpleSemaphore bufferMutex,
 SimpleFileWriter writer,
 boolean peptideMapping)

Method Details

flanking

public String flanking(PeptideProteinMapping peptideProteinMapping,
 FastaMapper peptideMapper)

run

public void run()

Specified by:

run in interface Runnable