Uses of Enum
com.compomics.util.experiment.biology.aminoacids.AminoAcid.Property

Packages that use AminoAcid.Property

Package	Description
com.compomics.util.experiment.biology.aminoacids	The amino acid classes.
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration	This package contains the classes needed to configure the ms2pip features.
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features	This package contains features implemented for ms2pip.
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic	This package contains generic features implemented for ms2pip.

Uses of AminoAcid.Property in com.compomics.util.experiment.biology.aminoacids

Methods in com.compomics.util.experiment.biology.aminoacids that return AminoAcid.Property

Modifier and Type	Method	Description
AminoAcid.Property	AminoAcid.Property.getProperty(int index)	Returns the property at index.
static AminoAcid.Property	AminoAcid.Property.valueOf(String name)	Returns the enum constant of this type with the specified name.
static AminoAcid.Property[]	AminoAcid.Property.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in com.compomics.util.experiment.biology.aminoacids with parameters of type AminoAcid.Property

Modifier and Type	Method	Description
double	AminoAcid.getProperty(AminoAcid.Property property)	Returns a property of the amino acid.

Uses of AminoAcid.Property in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration

Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration that return AminoAcid.Property

Modifier and Type	Method	Description
AminoAcid.Property[]	MultipleAAPropertyFeature.getAminoAcidProperties()	Returns the amino acid properties to consider.
AminoAcid.Property	SingleAAPropertyFeature.getAminoAcidProperty()	Returns the amino acid property to consider.

Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration with parameters of type AminoAcid.Property

Modifier and Type	Method	Description
void	SingleAAPropertyFeature.setAminoAcidProperty(AminoAcid.Property aminoAcidProperty)	Sets the amino acid property to consider.

Uses of AminoAcid.Property in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features

Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features that return AminoAcid.Property

Modifier and Type	Method	Description
AminoAcid.Property[]	AAPropertyRelationshipFeature.getAminoAcidProperties()

Constructors in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features with parameters of type AminoAcid.Property

Modifier	Constructor	Description
	AAPropertyFeatureAbsolute(int aaIndex, AminoAcid.Property property)	Constructor.
	AAPropertyFeatureRelative(int aaIndex, AminoAcid.Property property)	Constructor.
	ComplementaryIonAminoAcidFeature(AminoAcid.Property aminoAcidProperty, AASequenceFeature.Function function)	Constructor.
	ForwardIonAminoAcidFeature(AminoAcid.Property aminoAcidProperty, AASequenceFeature.Function function)	Constructor.
	PeptideAminoAcidFeature(AminoAcid.Property aminoAcidProperty, AASequenceFeature.Function function)	Constructor.

Uses of AminoAcid.Property in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic

Fields in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic declared as AminoAcid.Property

Modifier and Type	Field	Description
protected AminoAcid.Property	AAPropertyFeature.aminoAcidProperty	The property of the amino acids to consider.
protected AminoAcid.Property	AASequenceFeature.aminoAcidProperty	The property of the amino acids to consider.

Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic that return AminoAcid.Property

Modifier and Type	Method	Description
AminoAcid.Property	AAPropertyFeature.getAminoAcidProperty()
AminoAcid.Property	AASequenceFeature.getAminoAcidProperty()

Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic with parameters of type AminoAcid.Property

Modifier and Type	Method	Description
void	AAPropertyFeature.setAminoAcidProperty(AminoAcid.Property aminoAcidProperty)
void	AASequenceFeature.setAminoAcidProperty(AminoAcid.Property aminoAcidProperty)