Uses of Class
com.compomics.util.experiment.biology.atoms.Atom
Packages that use Atom
Package
Description
The atom classes.
Atoms implementations.
Atoms GUI dialogs.
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Uses of Atom in com.compomics.util.experiment.biology.atoms
Fields in com.compomics.util.experiment.biology.atoms declared as AtomModifier and TypeFieldDescriptionstatic final AtomAtom.CThe carbon atom.static final AtomAtom.CaThe Calcium atom.static final AtomAtom.ClThe Chlorine atom.static final AtomAtom.CoThe Cobalt atom.static final AtomAtom.CuThe Copper atom.static final AtomAtom.FThe Fluorine atom.static final AtomAtom.FeThe Iron atom.static final AtomAtom.HThe hydrogen atom.static final AtomAtom.HeThe helium atom.static final AtomAtom.IThe Iodine atom.static final AtomAtom.KThe Potassium atom.static final AtomAtom.LiThe phosphorus atom.static final AtomAtom.MgThe Magnesium atom.static final AtomAtom.MnThe Manganese atom.static final AtomAtom.NThe nitrogen atom.static final AtomAtom.NaThe sodium atom.static final AtomAtom.NiThe Nickel atom.static final AtomAtom.OThe oxygen atom.static final AtomAtom.PThe phosphorus atom.static final AtomAtom.SThe sulfur atom.static final AtomAtom.SeThe selenium atom.static final AtomAtom.ZnThe Zinc atom.Methods in com.compomics.util.experiment.biology.atoms that return AtomModifier and TypeMethodDescriptionstatic AtomReturns the atom corresponding to the given short name.Methods in com.compomics.util.experiment.biology.atoms with parameters of type AtomModifier and TypeMethodDescriptionintAtomChain.getOccurrence(Atom atom, Integer isotope) Returns the occurrence of a given atom in the chain.voidRemoves all the occurrences of the given atom.voidAtomChain.setOccurrence(Atom atom, Integer isotope, Integer occurrence) Sets the occurrence of a given atom.Constructors in com.compomics.util.experiment.biology.atoms with parameters of type Atom -
Uses of Atom in com.compomics.util.experiment.biology.atoms.impl
Subclasses of Atom in com.compomics.util.experiment.biology.atoms.implModifier and TypeClassDescriptionclassThe calcium atom.classCarbon.classThe Chlorine atom.classThe Cobalt atom.classThe copper atom.classThe fluorine atom.classThe helium atom.classThe hydrogen atom.classIodine.classThe iron atom.classThe Lithium atom.classThe magnesium atom.classThe Manganese atom.classThe Nickel atom.classThe nitrogen atom.classThe oxygen atom.classThe phosphorus atom.classThe potassium atom.classSelenium.classThe sodium atom.classThe sulfur atom.classThe zinc atom. -
Uses of Atom in com.compomics.util.gui.atoms
Methods in com.compomics.util.gui.atoms that return AtomConstructors in com.compomics.util.gui.atoms with parameters of type AtomModifierConstructorDescriptionAtomPanel(AtomChainDialog atomChainDialog, Atom atom, int isotope, int occurrence, int panelIndex, boolean addOnly) Creates a new AtomPanel.