Uses of Class
com.compomics.util.experiment.biology.atoms.AtomImpl

Packages that use AtomImpl

Package	Description
com.compomics.util.experiment.biology.atoms	The atom classes.

Uses of AtomImpl in com.compomics.util.experiment.biology.atoms

Methods in com.compomics.util.experiment.biology.atoms that return types with arguments of type AtomImpl

Modifier and Type	Method	Description
ArrayList<AtomImpl>	AtomChain.getAtomChain()	Returns the atom chain as a list of AtomImpl.

Methods in com.compomics.util.experiment.biology.atoms with parameters of type AtomImpl

Modifier and Type	Method	Description
void	AtomChain.append(AtomImpl atom)	Appends an atom to the chain of atoms.
void	AtomChain.append(AtomImpl atom, int occurrence)	Appends an atom to the chain of atoms.
boolean	AtomImpl.isSameAs(AtomImpl anotherAtom)	Indicates whether another atom is the same as this one.