Uses of Package
com.compomics.util.experiment.biology.enzymes

Packages that use com.compomics.util.experiment.biology.enzymes

Package	Description
com.compomics.cli.enzymes	Command line for the handling of enzymes.
com.compomics.util.experiment.biology.enzymes	Classes related to enzymes.
com.compomics.util.experiment.biology.proteins	Classes related to proteins.
com.compomics.util.experiment.identification.protein_sequences.digestion.iterators	This package contains implementations of the SequenceIterator interface.
com.compomics.util.experiment.identification.utils	This package contains utilities classes to handle identification objects.
com.compomics.util.gui.parameters.identification.pride	Dialogs for pride reprocessing parameters.
com.compomics.util.parameters.identification.search	Identification parameters relative to the search.
com.compomics.util.protein	Classes concerning useful Objects and their operations for modeling and handling proteins.

Classes in com.compomics.util.experiment.biology.enzymes used by com.compomics.cli.enzymes

Class	Description
Enzyme	This class models an enzyme.

Classes in com.compomics.util.experiment.biology.enzymes used by com.compomics.util.experiment.biology.enzymes

Class	Description
Enzyme	This class models an enzyme.
EnzymeFactory	This factory will load enzymes from a JSON file and provide them on demand as a standard class.

Classes in com.compomics.util.experiment.biology.enzymes used by com.compomics.util.experiment.biology.proteins

Class	Description
Enzyme	This class models an enzyme.

Classes in com.compomics.util.experiment.biology.enzymes used by com.compomics.util.experiment.identification.protein_sequences.digestion.iterators

Class	Description
Enzyme	This class models an enzyme.

Classes in com.compomics.util.experiment.biology.enzymes used by com.compomics.util.experiment.identification.utils

Class	Description
Enzyme	This class models an enzyme.

Classes in com.compomics.util.experiment.biology.enzymes used by com.compomics.util.gui.parameters.identification.pride

Class	Description
Enzyme	This class models an enzyme.

Classes in com.compomics.util.experiment.biology.enzymes used by com.compomics.util.parameters.identification.search

Class	Description
Enzyme	This class models an enzyme.

Classes in com.compomics.util.experiment.biology.enzymes used by com.compomics.util.protein

Class	Description
Enzyme	This class models an enzyme.