Uses of Class
com.compomics.util.experiment.biology.ions.impl.PeptideFragmentIon

Packages that use PeptideFragmentIon

Package	Description
com.compomics.util.experiment.identification.modification	Modification mapping and localization.

Uses of PeptideFragmentIon in com.compomics.util.experiment.identification.modification

Methods in com.compomics.util.experiment.identification.modification that return types with arguments of type PeptideFragmentIon

Modifier and Type	Method	Description
static HashMap<PeptideFragmentIon,ArrayList<IonMatch>>	ModificationtableContent.getModificationPlotData(Peptide peptide, Modification modification, int nMod, String spectrumFile, String spectrumTitle, Spectrum spectrum, AnnotationParameters annotationParameters, SpecificAnnotationParameters specificAnnotationParameters, ModificationParameters modificationParameters, SequenceProvider sequenceProvider, SequenceMatchingParameters modificationSequenceMatchingParameters)	Returns the modification plot series in the JFreechart format for one PSM.