Uses of Package
com.compomics.util.experiment.biology.ions.impl

Packages that use com.compomics.util.experiment.biology.ions.impl

Package	Description
com.compomics.util.experiment.biology.ions.impl	Ion implementations.
com.compomics.util.experiment.biology.modifications
com.compomics.util.experiment.identification.modification	Modification mapping and localization.
com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators	This package contains implementations of the SimpleAnnotator allowing the annotation of specific sets of ions.
com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators	This package contains implementations of the SpectrumAnnotator allowing the annotation of all ions.
com.compomics.util.experiment.quantification.reporterion	Experiment classes related to reporter ions.

Classes in com.compomics.util.experiment.biology.ions.impl used by com.compomics.util.experiment.biology.ions.impl

Class	Description
ElementaryIon	This class represents an elementary ion.
ImmoniumIon	Represents an immonium ion.
RelatedIon	Represents a related ion, i.e., an ion that is related to a given amino acid, and is its own factory.
ReporterIon	This class models a reporter ion and is its own factory.

Classes in com.compomics.util.experiment.biology.ions.impl used by com.compomics.util.experiment.biology.modifications

Class	Description
ReporterIon	This class models a reporter ion and is its own factory.

Classes in com.compomics.util.experiment.biology.ions.impl used by com.compomics.util.experiment.identification.modification

Class	Description
PeptideFragmentIon	This class models a peptide fragment ion.

Classes in com.compomics.util.experiment.biology.ions.impl used by com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators

Class	Description
ReporterIon	This class models a reporter ion and is its own factory.

Classes in com.compomics.util.experiment.biology.ions.impl used by com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators

Class	Description
ReporterIon	This class models a reporter ion and is its own factory.

Classes in com.compomics.util.experiment.biology.ions.impl used by com.compomics.util.experiment.quantification.reporterion

Class	Description
ReporterIon	This class models a reporter ion and is its own factory.