Uses of Enum
com.compomics.util.experiment.biology.modifications.ModificationCategory
Packages that use ModificationCategory
Package
Description
Parameters settings for the search algorithms.
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Uses of ModificationCategory in com.compomics.util.experiment.biology.modifications
Methods in com.compomics.util.experiment.biology.modifications that return ModificationCategoryModifier and TypeMethodDescriptionModification.getCategory()Returns the modification category.static ModificationCategoryReturns the enum constant of this type with the specified name.static ModificationCategory[]ModificationCategory.values()Returns an array containing the constants of this enum type, in the order they are declared.Methods in com.compomics.util.experiment.biology.modifications with parameters of type ModificationCategoryModifier and TypeMethodDescriptionModificationFactory.getModifications(ModificationCategory... modCategories) Returns the names of all modifications in the given categories.voidModification.setCategory(ModificationCategory category) Set the modification category.Constructors in com.compomics.util.experiment.biology.modifications with parameters of type ModificationCategoryModifierConstructorDescriptionModification(ModificationType modificationType, String name, Double mass, ArrayList<String> residues, ModificationCategory category) Simple constructor for a modification.Modification(ModificationType modificationType, String name, String shortName, AtomChain atomChainAdded, AtomChain atomChainRemoved, AminoAcidPattern aminoAcidPattern, ModificationCategory category) Constructor for a reference modification.Modification(ModificationType modificationType, String name, String shortName, AtomChain atomChainAdded, AtomChain atomChainRemoved, AminoAcidPattern aminoAcidPattern, CvTerm unimodCvTerm, CvTerm psiModCvTerm, ModificationCategory category) Constructor for a reference modification. -
Uses of ModificationCategory in com.compomics.util.parameters.identification.tool_specific
Methods in com.compomics.util.parameters.identification.tool_specific that return types with arguments of type ModificationCategoryModifier and TypeMethodDescriptionMetaMorpheusParameters.getGPtmCategories()Returns the modification categories to include in the G-PTM search.Method parameters in com.compomics.util.parameters.identification.tool_specific with type arguments of type ModificationCategoryModifier and TypeMethodDescriptionvoidMetaMorpheusParameters.setGPtmCategories(ArrayList<ModificationCategory> gPtmCategories) Set the modification categories to include in the G-PTM search.