Package com.compomics.util.experiment.biology.variants.amino_acids

Class Substitution

java.lang.Object

com.compomics.util.experiment.biology.variants.amino_acids.Substitution

All Implemented Interfaces:

Variant

public class Substitution
extends Object
implements Variant

Class representing an amino acid substitution.

Author:

Marc Vaudel

Constructor Summary

Constructors

Constructor	Description
Substitution()	Empty default constructor
Substitution(char originalAa, char substitutedAa)	Constructor.

Method Summary

Modifier and Type	Method	Description
String	getDescription()	Returns the description of the variant as string.
char	getOriginalAminoAcid()
char	getSubstitutedAminoAcid()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Substitution

public Substitution()

Empty default constructor

Substitution

public Substitution(char originalAa,
 char substitutedAa)

Constructor.

Parameters:

originalAa - the single character code of the original amino acid

substitutedAa - the single character code of the substituted amino acid

Method Details

getDescription

public String getDescription()

Description copied from interface: Variant

Returns the description of the variant as string.

Specified by:

getDescription in interface Variant

Returns:

the description of the variant as string

getOriginalAminoAcid

public char getOriginalAminoAcid()

getSubstitutedAminoAcid

public char getSubstitutedAminoAcid()