Uses of Interface
com.compomics.util.experiment.biology.variants.Variant

Packages that use Variant

Package	Description
com.compomics.util.experiment.biology.variants.amino_acids	Type of implemented variants.
com.compomics.util.experiment.identification.matches	Experiment classes related to matches.

Uses of Variant in com.compomics.util.experiment.biology.variants.amino_acids

Classes in com.compomics.util.experiment.biology.variants.amino_acids that implement Variant

Modifier and Type	Class	Description
class	Deletion	Class representing an amino acid deletion.
class	Insertion	Class representing an amino acid insertion.
class	Substitution	Class representing an amino acid substitution.
class	Swap	Class representing an amino acid swap.

Uses of Variant in com.compomics.util.experiment.identification.matches

Methods in com.compomics.util.experiment.identification.matches that return types with arguments of type Variant

Modifier and Type	Method	Description
HashMap<Integer,Variant>	PeptideVariantMatches.getVariantMatches()	Returns the map of variants indexed by 0 based position on the peptide.

Constructor parameters in com.compomics.util.experiment.identification.matches with type arguments of type Variant

Modifier	Constructor	Description
	PeptideVariantMatches(HashMap<Integer,Variant> variantMatches, int lengthDiff)	Constructor.