Package com.compomics.util.experiment.identification

Class IdentificationKeys

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

com.compomics.util.experiment.identification.IdentificationKeys

All Implemented Interfaces:

Serializable

public class IdentificationKeys
extends ExperimentObject

Placeholder for the keys of the objects in the identification.

Author:

Marc Vaudel

See Also:

• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
ArrayList<String>	fractions	The names of the spectrum files (without extensions) that were used for the PSMs.
static final long	KEY	Key to use in the database.
final HashSet<Long>	peptideIdentification	List of the keys of all imported peptides.
final HashSet<Long>	proteinIdentification	List of the keys of all imported proteins.
final HashMap<String,HashSet<Long>>	proteinMap	A map linking protein accessions to all their protein matches keys.
HashMap<String,HashSet<Long>>	spectrumIdentification	Map mapping spectra per file.

Fields inherited from class com.compomics.util.experiment.personalization.ExperimentObject

NO_KEY

Constructor Summary

Constructors

Constructor	Description
IdentificationKeys()

Method Summary

Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject

addUrParam, asLong, clearParametersMap, getId, getUrParam, getUrParams, removeUrParam, setId, setUrParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

KEY

public static final long KEY

Key to use in the database.

proteinIdentification

public final HashSet<Long> proteinIdentification

List of the keys of all imported proteins.

peptideIdentification

public final HashSet<Long> peptideIdentification

List of the keys of all imported peptides.

spectrumIdentification

public HashMap<String,HashSet<Long>> spectrumIdentification

Map mapping spectra per file.

proteinMap

public final HashMap<String,HashSet<Long>> proteinMap

A map linking protein accessions to all their protein matches keys.

fractions

public ArrayList<String> fractions

The names of the spectrum files (without extensions) that were used for the PSMs.

Constructor Details

IdentificationKeys

public IdentificationKeys()