Package com.compomics.util.experiment.identification

Class IdentificationMethod

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

com.compomics.util.experiment.identification.IdentificationMethod

All Implemented Interfaces:

Serializable

public class IdentificationMethod
extends ExperimentObject

This class will contain all methods used to obtain identifications. User: Marc Date: Nov 11, 2010 Time: 3:56:49 PM

See Also:

• Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
static final int	MS2_IDENTIFICATION	index for identification method based on MS2 fragment ion matching
static final int	PEPTIDE_FINGERPRINTING	index for identification method based on peptide mass fingerprinting

Fields inherited from class com.compomics.util.experiment.personalization.ExperimentObject

NO_KEY

Constructor Summary

Constructors

Constructor	Description
IdentificationMethod()	Empty default constructor
IdentificationMethod(int index)	Constructor for the identification method

Method Summary

Modifier and Type	Method	Description
int	getIndex()	returns the index of the identification method

Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject

addUrParam, asLong, clearParametersMap, getId, getUrParam, getUrParams, removeUrParam, setId, setUrParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

PEPTIDE_FINGERPRINTING

public static final int PEPTIDE_FINGERPRINTING

index for identification method based on peptide mass fingerprinting

See Also:

• Constant Field Values

MS2_IDENTIFICATION

public static final int MS2_IDENTIFICATION

index for identification method based on MS2 fragment ion matching

See Also:

• Constant Field Values

Constructor Details

IdentificationMethod

public IdentificationMethod()

Empty default constructor

IdentificationMethod

public IdentificationMethod(int index)

Constructor for the identification method

Parameters:

index - the index of the method as indexed by the static fields

Method Details

getIndex

public int getIndex()

returns the index of the identification method

Returns:

the index of the identification method