Uses of Interface
com.compomics.util.experiment.identification.amino_acid_tags.TagComponent

Packages that use TagComponent

Package	Description
com.compomics.util.experiment.biology.aminoacids.sequence	Classes related to the handling of protein sequences.
com.compomics.util.experiment.identification.amino_acid_tags	Amino Acid Tag classes.

Uses of TagComponent in com.compomics.util.experiment.biology.aminoacids.sequence

Classes in com.compomics.util.experiment.biology.aminoacids.sequence that implement TagComponent

Modifier and Type	Class	Description
class	AminoAcidSequence	This class represents a series of amino acids with associated modifications.

Methods in com.compomics.util.experiment.biology.aminoacids.sequence with parameters of type TagComponent

Modifier and Type	Method	Description
boolean	AminoAcidSequence.isSameAs(TagComponent anotherCompontent, SequenceMatchingParameters sequenceMatchingPreferences)
boolean	AminoAcidSequence.isSameSequenceAndModificationStatusAs(TagComponent anotherCompontent, SequenceMatchingParameters sequenceMatchingPreferences)

Uses of TagComponent in com.compomics.util.experiment.identification.amino_acid_tags

Classes in com.compomics.util.experiment.identification.amino_acid_tags that implement TagComponent

Modifier and Type	Class	Description
class	MassGap	An undefined mass gap.

Methods in com.compomics.util.experiment.identification.amino_acid_tags that return types with arguments of type TagComponent

Modifier and Type	Method	Description
ArrayList<TagComponent>	Tag.getContent()	Returns the content of this tag as a list.

Methods in com.compomics.util.experiment.identification.amino_acid_tags with parameters of type TagComponent

Modifier and Type	Method	Description
boolean	MassGap.isSameAs(TagComponent anotherCompontent, SequenceMatchingParameters sequenceMatchingPreferences)
boolean	TagComponent.isSameAs(TagComponent anotherCompontent, SequenceMatchingParameters sequenceMatchingPreferences)	Indicates whether another component is the same as the component of interest.
boolean	MassGap.isSameSequenceAndModificationStatusAs(TagComponent anotherCompontent, SequenceMatchingParameters sequenceMatchingPreferences)
boolean	TagComponent.isSameSequenceAndModificationStatusAs(TagComponent anotherCompontent, SequenceMatchingParameters sequenceMatchingPreferences)	Indicates whether another component is the same as the component of interest.

Method parameters in com.compomics.util.experiment.identification.amino_acid_tags with type arguments of type TagComponent

Modifier and Type	Method	Description
void	Tag.setContent(ArrayList<TagComponent> content)	Sets the content for the given tag.