Uses of Package
com.compomics.util.experiment.identification.amino_acid_tags

Packages that use com.compomics.util.experiment.identification.amino_acid_tags

Package	Description
com.compomics.cli.peptide_mapper	Command line for PeptideMapper.
com.compomics.util.experiment.biology.aminoacids.sequence	Classes related to the handling of protein sequences.
com.compomics.util.experiment.biology.ions	Experiment classes related to ions.
com.compomics.util.experiment.identification.amino_acid_tags	Amino Acid Tag classes.
com.compomics.util.experiment.identification.protein_inference	Classes related to protein inference.
com.compomics.util.experiment.identification.protein_inference.fm_index	Protein sequence database indexing classes based on Burrows-Wheeler transform.
com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators	This package contains implementations of the SpectrumAnnotator allowing the annotation of all ions.
com.compomics.util.experiment.identification.spectrum_assumptions	Implementations of the SpectrumIdentificationAssumption.
com.compomics.util.experiment.identification.utils	This package contains utilities classes to handle identification objects.
com.compomics.util.gui.spectrum	Spectrum and Chromatogram visualization GUI classes.

Classes in com.compomics.util.experiment.identification.amino_acid_tags used by com.compomics.cli.peptide_mapper

Class	Description
Tag	This class represents a sequence mass tag.

Classes in com.compomics.util.experiment.identification.amino_acid_tags used by com.compomics.util.experiment.biology.aminoacids.sequence

Class	Description
TagComponent	Interface for a sequence tag component.

Classes in com.compomics.util.experiment.identification.amino_acid_tags used by com.compomics.util.experiment.biology.ions

Class	Description
Tag	This class represents a sequence mass tag.

Classes in com.compomics.util.experiment.identification.amino_acid_tags used by com.compomics.util.experiment.identification.amino_acid_tags

Class	Description
Tag	This class represents a sequence mass tag.
TagComponent	Interface for a sequence tag component.

Classes in com.compomics.util.experiment.identification.amino_acid_tags used by com.compomics.util.experiment.identification.protein_inference

Class	Description
Tag	This class represents a sequence mass tag.

Classes in com.compomics.util.experiment.identification.amino_acid_tags used by com.compomics.util.experiment.identification.protein_inference.fm_index

Class	Description
Tag	This class represents a sequence mass tag.

Classes in com.compomics.util.experiment.identification.amino_acid_tags used by com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators

Class	Description
Tag	This class represents a sequence mass tag.

Classes in com.compomics.util.experiment.identification.amino_acid_tags used by com.compomics.util.experiment.identification.spectrum_assumptions

Class	Description
Tag	This class represents a sequence mass tag.

Classes in com.compomics.util.experiment.identification.amino_acid_tags used by com.compomics.util.experiment.identification.utils

Class	Description
Tag	This class represents a sequence mass tag.

Classes in com.compomics.util.experiment.identification.amino_acid_tags used by com.compomics.util.gui.spectrum

Class	Description
Tag	This class represents a sequence mass tag.