Package com.compomics.util.experiment.identification.features

Enum IdentificationFeaturesCache.ObjectType

java.lang.Object

java.lang.Enum<IdentificationFeaturesCache.ObjectType>

com.compomics.util.experiment.identification.features.IdentificationFeaturesCache.ObjectType

All Implemented Interfaces:

Serializable, Comparable<IdentificationFeaturesCache.ObjectType>, java.lang.constant.Constable

Enclosing class:

IdentificationFeaturesCache

public static enum IdentificationFeaturesCache.ObjectType
extends Enum<IdentificationFeaturesCache.ObjectType>

An enumerator of the supported object types.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
AA_coverage	The amino acid coverage of a given protein.
containsEnzymaticPeptides	If a given protein accession contains enzymatic peptides: true or false.
coverable_AA_p	The likelihood to cover amino acids.
expected_coverage	The expected sequence coverage of a given protein.
max_psm_mz_for_peptides	The max mz value for all the PSMs for a given peptide.
number_of_confident_peptides	The number of confident peptides of a given protein.
number_of_confident_spectra	The number of confident spectra.
number_of_spectra	The number of spectra of a given protein.
number_of_validated_peptides	The number of validated peptides of a given protein.
number_of_validated_spectra	The number of validated spectra.
protein_groups_for_peptide	The number of validated protein groups for a peptide.
sequence_coverage	The sequence coverage of a given protein using validated peptides.
sequence_validation_coverage	The sequence coverage of a given protein.
spectrum_counting	The spectrum counting index of a given protein.
tryptic_protein	The non-tryptic peptides of a protein.
unique_peptides	The number of unique peptides.
unique_validated_peptides	The number of unique validated peptides.

Field Summary

Fields

Modifier and Type	Field	Description
final boolean	large	Boolean indicating whether this category contains large objects.

Method Summary

Modifier and Type	Method	Description
static IdentificationFeaturesCache.ObjectType	valueOf(String name)	Returns the enum constant of this type with the specified name.
static IdentificationFeaturesCache.ObjectType[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

tryptic_protein

public static final IdentificationFeaturesCache.ObjectType tryptic_protein

The non-tryptic peptides of a protein.

coverable_AA_p

public static final IdentificationFeaturesCache.ObjectType coverable_AA_p

The likelihood to cover amino acids.

AA_coverage

public static final IdentificationFeaturesCache.ObjectType AA_coverage

The amino acid coverage of a given protein.

number_of_validated_peptides

public static final IdentificationFeaturesCache.ObjectType number_of_validated_peptides

The number of validated peptides of a given protein.

number_of_confident_peptides

public static final IdentificationFeaturesCache.ObjectType number_of_confident_peptides

The number of confident peptides of a given protein.

number_of_spectra

public static final IdentificationFeaturesCache.ObjectType number_of_spectra

The number of spectra of a given protein.

number_of_validated_spectra

public static final IdentificationFeaturesCache.ObjectType number_of_validated_spectra

The number of validated spectra.

number_of_confident_spectra

public static final IdentificationFeaturesCache.ObjectType number_of_confident_spectra

The number of confident spectra.

unique_peptides

public static final IdentificationFeaturesCache.ObjectType unique_peptides

The number of unique peptides.

unique_validated_peptides

public static final IdentificationFeaturesCache.ObjectType unique_validated_peptides

The number of unique validated peptides.

protein_groups_for_peptide

public static final IdentificationFeaturesCache.ObjectType protein_groups_for_peptide

The number of validated protein groups for a peptide.

containsEnzymaticPeptides

public static final IdentificationFeaturesCache.ObjectType containsEnzymaticPeptides

If a given protein accession contains enzymatic peptides: true or false.

max_psm_mz_for_peptides

public static final IdentificationFeaturesCache.ObjectType max_psm_mz_for_peptides

The max mz value for all the PSMs for a given peptide.

sequence_coverage

public static final IdentificationFeaturesCache.ObjectType sequence_coverage

The sequence coverage of a given protein using validated peptides.

sequence_validation_coverage

public static final IdentificationFeaturesCache.ObjectType sequence_validation_coverage

The sequence coverage of a given protein.

expected_coverage

public static final IdentificationFeaturesCache.ObjectType expected_coverage

The expected sequence coverage of a given protein.

spectrum_counting

public static final IdentificationFeaturesCache.ObjectType spectrum_counting

The spectrum counting index of a given protein.

Field Details

large

public final boolean large

Boolean indicating whether this category contains large objects.

Method Details

values

public static IdentificationFeaturesCache.ObjectType[] values()

Returns an array containing the constants of this enum type, in the order they are declared.

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static IdentificationFeaturesCache.ObjectType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null