Uses of Class
com.compomics.util.experiment.identification.filtering.PeptideAssumptionFilter

Packages that use PeptideAssumptionFilter

Package	Description
com.compomics.util.experiment.identification.filtering	Classes for the filtering of identification objects.
com.compomics.util.gui.parameters.identification.advanced	Dialogs for advanced identification parameters.
com.compomics.util.parameters.identification	Identification parameters.

Uses of PeptideAssumptionFilter in com.compomics.util.experiment.identification.filtering

Methods in com.compomics.util.experiment.identification.filtering with parameters of type PeptideAssumptionFilter

Modifier and Type	Method	Description
boolean	PeptideAssumptionFilter.isSameAs(PeptideAssumptionFilter anotherFilter)	Indicates whether this filter is the same as another one.

Uses of PeptideAssumptionFilter in com.compomics.util.gui.parameters.identification.advanced

Methods in com.compomics.util.gui.parameters.identification.advanced that return PeptideAssumptionFilter

Modifier and Type	Method	Description
PeptideAssumptionFilter	MatchesImportParametersDialog.getFilter()	Returns the id filter as set by the user.

Constructors in com.compomics.util.gui.parameters.identification.advanced with parameters of type PeptideAssumptionFilter

Modifier	Constructor	Description
	MatchesImportParametersDialog(Dialog owner, Frame parentFrame, PeptideAssumptionFilter idFilter, boolean editable)	Creates a new ImportSettingsDialog with a dialog as owner.
	MatchesImportParametersDialog(Frame parentFrame, PeptideAssumptionFilter idFilter, boolean editable)	Creates a new ImportSettingsDialog with a frame as owner.

Uses of PeptideAssumptionFilter in com.compomics.util.parameters.identification

Methods in com.compomics.util.parameters.identification that return PeptideAssumptionFilter

Modifier and Type	Method	Description
PeptideAssumptionFilter	IdentificationParameters.getPeptideAssumptionFilter()	Returns the filter used when importing PSMs.

Methods in com.compomics.util.parameters.identification with parameters of type PeptideAssumptionFilter

Modifier and Type	Method	Description
void	IdentificationParameters.setPeptideAssumptionFilter(PeptideAssumptionFilter peptideAssumptionFilter)	Sets the filter used when importing PSMs.

Constructors in com.compomics.util.parameters.identification with parameters of type PeptideAssumptionFilter

Modifier	Constructor	Description
	IdentificationParameters(String name, String description, SearchParameters searchParameters, AnnotationParameters annotationParameters, SequenceMatchingParameters sequenceMatchingParameters, PeptideVariantsParameters peptideVariantsParameters, GeneParameters geneParameters, PsmScoringParameters psmScoringParameters, PeptideAssumptionFilter peptideAssumptionFilter, ModificationLocalizationParameters ModificationLocalizationParameters, ProteinInferenceParameters proteinInferenceParameters, IdMatchValidationParameters idValidationParameters, FractionParameters fractionParameters, FastaParameters fastaParameters)	Constructor.