Package com.compomics.util.experiment.identification.matches_iterators

Class SpectrumMatchesIterator

java.lang.Object

com.compomics.util.experiment.identification.matches_iterators.MatchesIterator

com.compomics.util.experiment.identification.matches_iterators.SpectrumMatchesIterator

public class SpectrumMatchesIterator
extends MatchesIterator

An iterator for spectrum matches.

Author:

Marc Vaudel, Harald Barsnes, Dominik Kopczynski

Constructor Summary

Constructors

Constructor	Description
SpectrumMatchesIterator(long[] keys, Identification identification, WaitingHandler waitingHandler, boolean displayProgress)	Constructor.
SpectrumMatchesIterator(long[] keys, Identification identification, WaitingHandler waitingHandler, boolean displayProgress, String filters)	Constructor.
SpectrumMatchesIterator(Identification identification, WaitingHandler waitingHandler, boolean displayProgress)	Constructor.

Method Summary

Modifier and Type	Method	Description
SpectrumMatch	next()	Returns the next match and updates the buffer.

Methods inherited from class com.compomics.util.experiment.identification.matches_iterators.MatchesIterator

nextObject

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SpectrumMatchesIterator

public SpectrumMatchesIterator(Identification identification,
 WaitingHandler waitingHandler,
 boolean displayProgress)

Constructor.

Parameters:

identification - the identification where to get the matches from

waitingHandler - the waiting handler allowing displaying progress and canceling the process

displayProgress - boolean indicating whether the progress of this method should be displayed on the waiting handler

SpectrumMatchesIterator

public SpectrumMatchesIterator(long[] keys,
 Identification identification,
 WaitingHandler waitingHandler,
 boolean displayProgress)

Constructor.

Parameters:

keys - the keys of the objects

identification - the identification where to get the matchesloadPs from

waitingHandler - the waiting handler allowing displaying progress and canceling the process

displayProgress - boolean indicating whether the progress of this method should be displayed on the waiting handler

SpectrumMatchesIterator

public SpectrumMatchesIterator(long[] keys,
 Identification identification,
 WaitingHandler waitingHandler,
 boolean displayProgress,
 String filters)

Constructor.

Parameters:

keys - the keys of the objects

identification - the identification where to get the matchesloadPs from

waitingHandler - the waiting handler allowing displaying progress and canceling the process

displayProgress - boolean indicating whether the progress of this method should be displayed on the waiting handler

filters - filters for the class

Method Details

next

public SpectrumMatch next()

Returns the next match and updates the buffer. Null if the iterator is done iterating.

Returns:

the next match