Package com.compomics.util.experiment.identification.modification.peptide_mapping.performance

Class PerformanceBenchmarkRunnable

java.lang.Object

com.compomics.util.experiment.identification.modification.peptide_mapping.performance.PerformanceBenchmarkRunnable

All Implemented Interfaces:

Runnable

public class PerformanceBenchmarkRunnable
extends Object
implements Runnable

Runnable for the benchmark.

Author:

Marc Vaudel

Field Summary

Fields

Modifier and Type	Field	Description
int	failedPeptides	The number of peptides that failed.
static final int	PEPTIDE_LENGTH	The peptide length to use.
static final int	SEED	The seed to use.

Constructor Summary

Constructors

Constructor	Description
PerformanceBenchmarkRunnable(int nPeptides, Integer nMods, Integer nPossible, Integer nOccupied)	Constructor.

Method Summary

Modifier and Type	Method	Description
void	run()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

SEED

public static final int SEED

The seed to use.

See Also:

• Constant Field Values

PEPTIDE_LENGTH

public static final int PEPTIDE_LENGTH

The peptide length to use.

See Also:

• Constant Field Values

failedPeptides

public int failedPeptides

The number of peptides that failed.

Constructor Details

PerformanceBenchmarkRunnable

public PerformanceBenchmarkRunnable(int nPeptides,
 Integer nMods,
 Integer nPossible,
 Integer nOccupied)

Constructor.

Parameters:

nPeptides - The number of peptides to generate.

nMods - The number of modifications to consider.

nPossible - The number of possible modification sites.

nOccupied - The number of occupied modification sites.

Method Details

run

public void run()

Specified by:

run in interface Runnable