Package com.compomics.util.experiment.identification.modification.scores

package com.compomics.util.experiment.identification.modification.scores

PTM scores.

Related Packages

Package	Description
com.compomics.util.experiment.identification.modification	Modification mapping and localization.
com.compomics.util.experiment.identification.modification.mapping	Mapping between search engine and Utilities modifications.
com.compomics.util.experiment.identification.modification.peptide_mapping	Classes used to map modifications to acceptor sites in peptides.
com.compomics.util.experiment.identification.modification.search_engine_mapping	Mapping between search engine and Utilities modifications.

Classes

Class	Description
MDScore	This class estimates the MD score as described in https://www.ncbi.nlm.nih.gov/pubmed/21057138 Note: this implementation of the MD score is not restricted to phosphorylation.
PhosphoRS	This class estimates the PhosphoRS score as described in https://www.ncbi.nlm.nih.gov/pubmed/22073976.