Package com.compomics.util.experiment.identification.modification.search_engine_mapping

Class ModificationLocalizationMapper

java.lang.Object

com.compomics.util.experiment.identification.modification.search_engine_mapping.ModificationLocalizationMapper

public class ModificationLocalizationMapper
extends Object

Function attempting to map modification localization based on their type.

Author:

Marc Vaudel, Harald Barsnes

Constructor Summary

Constructors

Constructor	Description
ModificationLocalizationMapper()

Method Summary

Modifier and Type	Method	Description
static void	modificationLocalization(Peptide peptide, IdentificationParameters identificationParameters, IdfileReader idfileReader, ModificationProvider modificationProvider, SequenceProvider sequenceProvider)	Makes an initial modification mapping based on the search engine results and the compatibility to the searched modifications.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ModificationLocalizationMapper

public ModificationLocalizationMapper()

Method Details

modificationLocalization

public static void modificationLocalization(Peptide peptide,
 IdentificationParameters identificationParameters,
 IdfileReader idfileReader,
 ModificationProvider modificationProvider,
 SequenceProvider sequenceProvider)

Makes an initial modification mapping based on the search engine results and the compatibility to the searched modifications.

Parameters:

peptide - The peptide where the modification was found.

identificationParameters - The identification parameters.

idfileReader - The identification file reader.

modificationProvider - The modification provider to use.

sequenceProvider - The sequence provider to use.