Package com.compomics.util.experiment.identification.peptide_fragmentation

Class FragmentItensityPredictor

java.lang.Object

com.compomics.util.experiment.identification.peptide_fragmentation.FragmentItensityPredictor

public class FragmentItensityPredictor
extends Object

Predictor for the peptide fragment intensity.

Author:

Marc Vaudel

Constructor Summary

Constructors

Constructor	Description
FragmentItensityPredictor()	Empty default constructor
FragmentItensityPredictor(PeptideFragmentationModel peptideFragmentationModel)	Constructor.

Method Summary

Modifier and Type	Method	Description
Double	getIntentisy(Ion ion)	Returns the intensity expected for the given peak.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FragmentItensityPredictor

public FragmentItensityPredictor()

Empty default constructor

FragmentItensityPredictor

public FragmentItensityPredictor(PeptideFragmentationModel peptideFragmentationModel)

Constructor.

Parameters:

peptideFragmentationModel - the model to use for the fragmentation of peptides

Method Details

getIntentisy

public Double getIntentisy(Ion ion)

Returns the intensity expected for the given peak.

Parameters:

ion - the ion of interest

Returns:

the expected intensity