Uses of Interface
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature

Packages that use Ms2pipFeature

Package	Description
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration	This package contains the classes needed to configure the ms2pip features.
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features	This package contains features implemented for ms2pip.
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic	This package contains generic features implemented for ms2pip.

Uses of Ms2pipFeature in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration

Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration that return Ms2pipFeature

Modifier and Type	Method	Description
Ms2pipFeature[]	FeaturesMap.getFeatures(String category)	Returns the features in the map for the given category.

Methods in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration with parameters of type Ms2pipFeature

Modifier and Type	Method	Description
void	FeaturesMap.addFeature(Ms2pipFeature ms2pipFeature)	Adds a feature to the map.

Uses of Ms2pipFeature in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features

Classes in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features that implement Ms2pipFeature

Modifier and Type	Class	Description
class	AAIdentityFeatureAbsolute	An amino acid identity feature at a fixed position on the peptide sequence.
class	AAIdentityFeatureRelative	An amino acid identity feature at a position relative to the end of an ion on the peptide sequence.
class	AAPropertyFeatureAbsolute	An amino acid property feature at a fixed position on the peptide sequence.
class	AAPropertyFeatureRelative	An amino acid property feature at a position relative to the end of an ion on the peptide sequence.
class	AAPropertyRelationshipFeature	Feature based on the relationship between two amino acid features.
class	ComplementaryIonAminoAcidFeature	Feature based on the amino acid properties of the complementary ion.
class	ComplementaryIonFeature	Feature based on a property of the complementary ion.
class	ForwardIonAminoAcidFeature	Feature based on the amino acid properties of the forward ion.
class	ForwardIonFeature	Feature based on a property of the forward ion.
class	ModificationFeature	Feature based on the modification status of an amino acid.
class	PeptideAminoAcidFeature	Feature based on the amino acid properties of a peptide.
class	PeptideFeature	Feature based on a peptide property.

Uses of Ms2pipFeature in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic

Classes in com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic that implement Ms2pipFeature

Modifier and Type	Class	Description
class	AAIdentityFeature	Feature based on an amino acid identity.
class	AAPropertyFeature	Feature based on an amino acid property.
class	AASequenceFeature	Feature based on the amino acid properties of a sequence.
class	IonFeature	Feature based on a property of an ion.