Package com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features

Class AAIdentityFeatureRelative

java.lang.Object

com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAIdentityFeature

com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAIdentityFeatureRelative

All Implemented Interfaces:

Ms2pipFeature

public class AAIdentityFeatureRelative
extends AAIdentityFeature

An amino acid identity feature at a position relative to the end of an ion on the peptide sequence. In this feature, an index of 0 represents the last amino acid of the ion.

Author:

Marc Vaudel

Field Summary

Fields

Modifier and Type	Field	Description
static final int	index	The index of this ms2pip feature.

Fields inherited from class com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAIdentityFeature

aaIndex, aminoAcid

Fields inherited from interface com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature

implementations

Constructor Summary

Constructors

Constructor	Description
AAIdentityFeatureRelative()	Empty default constructor
AAIdentityFeatureRelative(int aaIndex, char aminoAcid)	Constructor.

Method Summary

Modifier and Type	Method	Description
String	getCategory()	Returns the category of the feature.
String	getDescription()	Returns the description of the feature.
int	getIndex()	Returns an integer unique to this class.

Methods inherited from class com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAIdentityFeature

getAaIndex, getAminoAcid, setAaIndex, setAminoAcid

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

index

public static final int index

The index of this ms2pip feature.

See Also:

• Constant Field Values

Constructor Details

AAIdentityFeatureRelative

public AAIdentityFeatureRelative()

Empty default constructor

AAIdentityFeatureRelative

public AAIdentityFeatureRelative(int aaIndex,
 char aminoAcid)

Constructor. An index of 0 represents the last amino acid of the ion.

Parameters:

aaIndex - the index of the amino acid

aminoAcid - the amino acid targeted

Method Details

getCategory

public String getCategory()

Description copied from interface: Ms2pipFeature

Returns the category of the feature.

Returns:

the category of the feature

getDescription

public String getDescription()

Description copied from interface: Ms2pipFeature

Returns the description of the feature.

Returns:

the description of the feature

getIndex

public int getIndex()

Description copied from interface: Ms2pipFeature

Returns an integer unique to this class.

Returns:

an integer unique to this class