Package com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features

Class AAPropertyFeatureAbsolute

java.lang.Object

com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAPropertyFeature

com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.AAPropertyFeatureAbsolute

All Implemented Interfaces:

Ms2pipFeature, SingleAAPropertyFeature

public class AAPropertyFeatureAbsolute
extends AAPropertyFeature

An amino acid property feature at a fixed position on the peptide sequence. In this feature, a positive index refers to counting from the N-term where the first amino acid is 0. A negative index refers to counting from the C-term where the first amino acid is -1.

Author:

Marc Vaudel

Field Summary

Fields

Modifier and Type	Field	Description
static final int	index	The index of this ms2pip feature.

Fields inherited from class com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAPropertyFeature

aaIndex, aminoAcidProperty

Fields inherited from interface com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature

implementations

Constructor Summary

Constructors

Constructor	Description
AAPropertyFeatureAbsolute()	Empty default constructor
AAPropertyFeatureAbsolute(int aaIndex, AminoAcid.Property property)	Constructor.

Method Summary

Modifier and Type	Method	Description
String	getCategory()	Returns the category of the feature.
String	getDescription()	Returns the description of the feature.
int	getIndex()	Returns an integer unique to this class.

Methods inherited from class com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAPropertyFeature

getAaIndex, getAminoAcidProperty, setAaIndex, setAminoAcidProperty

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

index

public static final int index

The index of this ms2pip feature.

See Also:

• Constant Field Values

Constructor Details

AAPropertyFeatureAbsolute

public AAPropertyFeatureAbsolute()

Empty default constructor

AAPropertyFeatureAbsolute

public AAPropertyFeatureAbsolute(int aaIndex,
 AminoAcid.Property property)

Constructor. A positive index refers to counting from the N-term where the first amino acid is 0. A negative index refers to counting from the C-term where the first amino acid is -1.

Parameters:

aaIndex - the index on the sequence

property - the amino acid property

Method Details

getCategory

public String getCategory()

Description copied from interface: Ms2pipFeature

Returns the category of the feature.

Returns:

the category of the feature

getDescription

public String getDescription()

Description copied from interface: Ms2pipFeature

Returns the description of the feature.

Returns:

the description of the feature

getIndex

public int getIndex()

Description copied from interface: Ms2pipFeature

Returns an integer unique to this class.

Returns:

an integer unique to this class