Package com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features

Class ForwardIonAminoAcidFeature

java.lang.Object

com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AASequenceFeature

com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ForwardIonAminoAcidFeature

All Implemented Interfaces:

Ms2pipFeature, SingleAAPropertyFeature

public class ForwardIonAminoAcidFeature
extends AASequenceFeature

Feature based on the amino acid properties of the forward ion.

Author:

Marc Vaudel

Nested Class Summary

Nested classes/interfaces inherited from class com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AASequenceFeature

AASequenceFeature.Function

Field Summary

Fields

Modifier and Type	Field	Description
static final int	index	The index of this ms2pip feature.

Fields inherited from class com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AASequenceFeature

aminoAcidProperty, function

Fields inherited from interface com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature

implementations

Constructor Summary

Constructors

Constructor	Description
ForwardIonAminoAcidFeature()	Empty default constructor
ForwardIonAminoAcidFeature(AminoAcid.Property aminoAcidProperty, AASequenceFeature.Function function)	Constructor.

Method Summary

Modifier and Type	Method	Description
String	getCategory()	Returns the category of the feature.
String	getDescription()	Returns the description of the feature.
int	getIndex()	Returns an integer unique to this class.

Methods inherited from class com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AASequenceFeature

getAminoAcidProperty, getFunction, setAminoAcidProperty, setFunction

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

index

public static final int index

The index of this ms2pip feature.

See Also:

• Constant Field Values

Constructor Details

ForwardIonAminoAcidFeature

public ForwardIonAminoAcidFeature()

Empty default constructor

ForwardIonAminoAcidFeature

public ForwardIonAminoAcidFeature(AminoAcid.Property aminoAcidProperty,
 AASequenceFeature.Function function)

Constructor.

Parameters:

aminoAcidProperty - the amino acid property to consider

function - the function used to compare the amino acid properties

Method Details

getCategory

public String getCategory()

Description copied from interface: Ms2pipFeature

Returns the category of the feature.

Returns:

the category of the feature

getDescription

public String getDescription()

Description copied from interface: Ms2pipFeature

Returns the description of the feature.

Returns:

the description of the feature

getIndex

public int getIndex()

Description copied from interface: Ms2pipFeature

Returns an integer unique to this class.

Returns:

an integer unique to this class