Package com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features

Class ModificationFeature

java.lang.Object

com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.ModificationFeature

All Implemented Interfaces:

Ms2pipFeature

public class ModificationFeature
extends Object
implements Ms2pipFeature

Feature based on the modification status of an amino acid.

Author:

Marc Vaudel

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static enum	ModificationFeature.Property	Enum for the possible features.

Field Summary

Fields

Modifier and Type	Field	Description
static final int	index	The index of this ms2pip feature.

Fields inherited from interface com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature

implementations

Constructor Summary

Constructors

Constructor	Description
ModificationFeature()	Empty default constructor
ModificationFeature(ModificationFeature.Property property)	Constructor.

Method Summary

Modifier and Type	Method	Description
String	getCategory()	Returns the category of the feature.
String	getDescription()	Returns the description of the feature.
int	getIndex()	Returns an integer unique to this class.
ModificationFeature.Property	getProperty()	Returns the feature property.
void	setProperty(ModificationFeature.Property property)	Sets the feature property.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

index

public static final int index

The index of this ms2pip feature.

See Also:

• Constant Field Values

Constructor Details

ModificationFeature

public ModificationFeature()

Empty default constructor

ModificationFeature

public ModificationFeature(ModificationFeature.Property property)

Constructor.

Parameters:

property - the peptide property

Method Details

getProperty

public ModificationFeature.Property getProperty()

Returns the feature property.

Returns:

the feature property

setProperty

public void setProperty(ModificationFeature.Property property)

Sets the feature property.

Parameters:

property - the feature property

getCategory

public String getCategory()

Description copied from interface: Ms2pipFeature

Returns the category of the feature.

Specified by:

getCategory in interface Ms2pipFeature

Returns:

the category of the feature

getDescription

public String getDescription()

Description copied from interface: Ms2pipFeature

Returns the description of the feature.

Specified by:

getDescription in interface Ms2pipFeature

Returns:

the description of the feature

getIndex

public int getIndex()

Description copied from interface: Ms2pipFeature

Returns an integer unique to this class.

Specified by:

getIndex in interface Ms2pipFeature

Returns:

an integer unique to this class