Package com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic

Class AAIdentityFeature

java.lang.Object
com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.features.generic.AAIdentityFeature
All Implemented Interfaces:
Ms2pipFeature
Direct Known Subclasses:
AAIdentityFeatureAbsolute, AAIdentityFeatureRelative
public abstract class AAIdentityFeature extends Object implements Ms2pipFeature
Feature based on an amino acid identity.
Author:
Marc Vaudel

  • Field Summary

    Fields
    Modifier and Type
    Field
    Description
    protected int
    aaIndex
    The index on the sequence.
    protected char
    aminoAcid
    The amino acid targeted represented as single letter code.

    Fields inherited from interface com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature

    implementations

  • Constructor Summary

    Constructors
    Constructor
    Description
    AAIdentityFeature()
    Empty default constructor

  • Method Summary

    Modifier and Type
    Method
    Description
    int
    getAaIndex()
    Returns the index on the sequence.
    char
    getAminoAcid()
    Returns the amino acid targeted represented as single letter code.
    void
    setAaIndex(int aaIndex)
    Sets the index on the sequence.
    void
    setAminoAcid(char aminoAcid)
    Sets the amino acid targeted represented as single letter code.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    Methods inherited from interface com.compomics.util.experiment.identification.peptide_fragmentation.models.ms2pip.features_configuration.Ms2pipFeature

    getCategory, getDescription, getIndex

  • Field Details

    • aaIndex

      protected int aaIndex
      The index on the sequence.

    • aminoAcid

      protected char aminoAcid
      The amino acid targeted represented as single letter code.

  • Constructor Details

    • AAIdentityFeature

      public AAIdentityFeature()
      Empty default constructor

  • Method Details

    • getAaIndex

      public int getAaIndex()
      Returns the index on the sequence.
      Returns:
      the index on the sequence

    • setAaIndex

      public void setAaIndex(int aaIndex)
      Sets the index on the sequence.
      Parameters:
      aaIndex - the index on the sequence

    • getAminoAcid

      public char getAminoAcid()
      Returns the amino acid targeted represented as single letter code.
      Returns:
      the amino acid targeted represented as single letter code

    • setAminoAcid

      public void setAminoAcid(char aminoAcid)
      Sets the amino acid targeted represented as single letter code.
      Parameters:
      aminoAcid - the amino acid targeted represented as single letter code