Uses of Package
com.compomics.util.experiment.identification.peptide_shaker

Packages that use com.compomics.util.experiment.identification.peptide_shaker

Package	Description
com.compomics.util.experiment.identification.features	Classes for the generation of identification features.
com.compomics.util.experiment.identification.peptide_shaker	Experiment classes used in PeptideShaker calculations.
com.compomics.util.experiment.quantification.spectrumcounting	Experiment classes related to spectrum counting.

Classes in com.compomics.util.experiment.identification.peptide_shaker used by com.compomics.util.experiment.identification.features

Class	Description
Metrics	This class contains metrics gathered during the creation of a PeptideShaker project.

Classes in com.compomics.util.experiment.identification.peptide_shaker used by com.compomics.util.experiment.identification.peptide_shaker

Class	Description
ModificationScoring	This class contains stores the modification localization scores.
PSModificationScores	This class contains the scores for the locations of the possible modifications.
PSParameter	PeptideShaker compomics utilities experiment customizable parameter.

Classes in com.compomics.util.experiment.identification.peptide_shaker used by com.compomics.util.experiment.quantification.spectrumcounting

Class	Description
Metrics	This class contains metrics gathered during the creation of a PeptideShaker project.