Uses of Interface
com.compomics.util.experiment.identification.protein_inference.FastaMapper

Packages that use FastaMapper

Package	Description
com.compomics.cli.peptide_mapper	Command line for PeptideMapper.
com.compomics.util.experiment.identification.protein_inference.fm_index	Protein sequence database indexing classes based on Burrows-Wheeler transform.

Uses of FastaMapper in com.compomics.cli.peptide_mapper

Methods in com.compomics.cli.peptide_mapper with parameters of type FastaMapper

Modifier and Type	Method	Description
String	MappingWorker.flanking(PeptideProteinMapping peptideProteinMapping, FastaMapper peptideMapper)

Constructors in com.compomics.cli.peptide_mapper with parameters of type FastaMapper

Modifier	Constructor	Description
	MappingWorker(WaitingHandlerCLIImpl waitingHandlerCLIImpl, FastaMapper peptideMapper, IdentificationParameters identificationParameters, SimpleFileReader reader, SimpleSemaphore bufferMutex, SimpleFileWriter writer, boolean peptideMapping)

Uses of FastaMapper in com.compomics.util.experiment.identification.protein_inference.fm_index

Classes in com.compomics.util.experiment.identification.protein_inference.fm_index that implement FastaMapper

Modifier and Type	Class	Description
class	FMIndex	The FM index.