Package com.compomics.util.experiment.identification.protein_inference.fm_index

package com.compomics.util.experiment.identification.protein_inference.fm_index

Protein sequence database indexing classes based on Burrows-Wheeler transform.

Related Packages

Package	Description
com.compomics.util.experiment.identification.protein_inference	Classes related to protein inference.

Classes

Class	Description
AccessionMetaData	Accession meta data.
CacheElement	The cache element.
FMIndex	The FM index.
MassIndexMap	The mass index map.
MatrixContent	Element for the matrix necessary in pattern search of the FMIndex.
Rank	Rank as used in the FM index.
SNPElement
TagElement	The tag element.
WaveletTree	Wavelet tree.