Package com.compomics.util.experiment.identification.protein_sequences.digestion

Class ExtendedPeptide

java.lang.Object

com.compomics.util.experiment.identification.protein_sequences.digestion.ExtendedPeptide

public class ExtendedPeptide
extends Object

This class packages together a peptide, its fixed modifications and its position on the protein.

Author:

Marc Vaudel

Field Summary

Fields

Modifier and Type	Field	Description
final String[]	fixedModifications	The fixed modifications of the peptide.
final Peptide	peptide	The peptide.
final int	position	The position of the peptide on the protein.

Constructor Summary

Constructors

Constructor	Description
ExtendedPeptide()	Empty default constructor
ExtendedPeptide(Peptide peptide, int position, String[] fixedModifications)	Constructor.

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

peptide

public final Peptide peptide

The peptide.

position

public final int position

The position of the peptide on the protein.

fixedModifications

public final String[] fixedModifications

The fixed modifications of the peptide.

Constructor Details

ExtendedPeptide

public ExtendedPeptide()

Empty default constructor

ExtendedPeptide

public ExtendedPeptide(Peptide peptide,
 int position,
 String[] fixedModifications)

Constructor.

Parameters:

peptide - the peptide

position - the position of the peptide on the protein

fixedModifications - the fixed modifications on the peptide