Package com.compomics.util.experiment.identification.protein_sequences.digestion

Interface SequenceIterator

All Known Implementing Classes:

NoDigestionCombinationIterator, NoDigestionIterator, SpecificSingleEnzymeCombinationIterator, SpecificSingleEnzymeIterator, UnspecificCombinationIterator, UnspecificIterator

public interface SequenceIterator

Interface for an iterator returning peptides along a protein sequence.

Author:

Marc Vaudel

Method Summary

Modifier and Type	Method	Description
ExtendedPeptide	getNextPeptide()	Returns the next peptide that can be generated from the iterator.

Method Details

getNextPeptide

ExtendedPeptide getNextPeptide()
                        throws InterruptedException

Returns the next peptide that can be generated from the iterator. Null if none left.

Returns:

the next peptide that can be generated from the iterator

Throws:

InterruptedException - exception thrown if a thread is interrupted