Uses of Class
com.compomics.util.experiment.identification.protein_sequences.digestion.ExtendedPeptide
Packages that use ExtendedPeptide
Package
Description
This package contains classes used to digest protein sequences into peptides.
This package contains implementations of the SequenceIterator interface.
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Uses of ExtendedPeptide in com.compomics.util.experiment.identification.protein_sequences.digestion
Methods in com.compomics.util.experiment.identification.protein_sequences.digestion that return ExtendedPeptideModifier and TypeMethodDescriptionSequenceIterator.getNextPeptide()Returns the next peptide that can be generated from the iterator.PeptideDraft.getPeptide(double massMin, double massMax) Returns a peptide from the peptide draft.PeptideDraft.getPeptide(double massMin, double massMax, BoxedObject<Boolean> smallMass) Returns a peptide from the peptide draft.ProteinIteratorUtils.getPeptideFromProtein(char[] proteinSequence, int indexOnProtein, double massMin, double massMax) Returns a peptide from the given sequence.ProteinIteratorUtils.getPeptideFromProtein(char[] peptideSequence, String proteinSequence, int indexOnProtein, double massMin, double massMax, BoxedObject<Boolean> smallMass) Returns a peptide from the given sequence on the given protein.ProteinIteratorUtils.getPeptideFromProtein(char[] peptideSequence, String proteinSequence, int indexOnProtein, Double massMin, Double massMax) Returns a peptide from the given sequence on the given protein. -
Uses of ExtendedPeptide in com.compomics.util.experiment.identification.protein_sequences.digestion.iterators
Methods in com.compomics.util.experiment.identification.protein_sequences.digestion.iterators that return ExtendedPeptideModifier and TypeMethodDescriptionNoDigestionCombinationIterator.getNextPeptide()NoDigestionIterator.getNextPeptide()SpecificSingleEnzymeCombinationIterator.getNextPeptide()SpecificSingleEnzymeIterator.getNextPeptide()UnspecificCombinationIterator.getNextPeptide()UnspecificIterator.getNextPeptide()