Uses of Interface
com.compomics.util.experiment.identification.protein_sequences.digestion.SequenceIterator

Packages that use SequenceIterator

Package	Description
com.compomics.util.experiment.identification.protein_sequences.digestion	This package contains classes used to digest protein sequences into peptides.
com.compomics.util.experiment.identification.protein_sequences.digestion.iterators	This package contains implementations of the SequenceIterator interface.

Uses of SequenceIterator in com.compomics.util.experiment.identification.protein_sequences.digestion

Methods in com.compomics.util.experiment.identification.protein_sequences.digestion that return SequenceIterator

Modifier and Type	Method	Description
SequenceIterator	IteratorFactory.getSequenceIterator(String sequence, DigestionParameters digestionPreferences, double massMin, double massMax)	Returns a sequence iterator for the given protein sequence and digestion preferences.

Uses of SequenceIterator in com.compomics.util.experiment.identification.protein_sequences.digestion.iterators

Classes in com.compomics.util.experiment.identification.protein_sequences.digestion.iterators that implement SequenceIterator

Modifier and Type	Class	Description
class	NoDigestionCombinationIterator	Iterator for no digestion of a sequence containing amino acid combinations.
class	NoDigestionIterator	Iterator for no digestion.
class	SpecificSingleEnzymeCombinationIterator	Iterator for enzymatic digestion.
class	SpecificSingleEnzymeIterator	Iterator for enzymatic digestion.
class	UnspecificCombinationIterator	Iterator for unspecific cleavage.
class	UnspecificIterator	Iterator for unspecific cleavage.