Package com.compomics.util.experiment.identification.protein_sequences.digestion.iterators

Class NoDigestionIterator

java.lang.Object

com.compomics.util.experiment.identification.protein_sequences.digestion.iterators.NoDigestionIterator

All Implemented Interfaces:

SequenceIterator

public class NoDigestionIterator
extends Object
implements SequenceIterator

Iterator for no digestion.

Author:

Marc Vaudel

Constructor Summary

Constructors

Constructor	Description
NoDigestionIterator()	Empty default constructor
NoDigestionIterator(ProteinIteratorUtils proteinIteratorUtils, String sequence, double massMin, double massMax)	Constructor.

Method Summary

Modifier and Type	Method	Description
ExtendedPeptide	getNextPeptide()	Returns the next peptide that can be generated from the iterator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

NoDigestionIterator

public NoDigestionIterator()

Empty default constructor

NoDigestionIterator

public NoDigestionIterator(ProteinIteratorUtils proteinIteratorUtils,
 String sequence,
 double massMin,
 double massMax)
                    throws InterruptedException

Constructor.

Parameters:

proteinIteratorUtils - utils for the creation of the peptides

sequence - the sequence to iterate

massMin - the minimal mass of a peptide

massMax - the maximal mass of a peptide

Throws:

InterruptedException - exception thrown if a thread is interrupted

Method Details

getNextPeptide

public ExtendedPeptide getNextPeptide()

Description copied from interface: SequenceIterator

Returns the next peptide that can be generated from the iterator. Null if none left.

Specified by:

getNextPeptide in interface SequenceIterator

Returns:

the next peptide that can be generated from the iterator