Package com.compomics.util.experiment.identification.protein_sequences.digestion

package com.compomics.util.experiment.identification.protein_sequences.digestion

This package contains classes used to digest protein sequences into peptides.

Related Packages

Package	Description
com.compomics.util.experiment.identification.protein_sequences	Protein sequence handling related classes.
com.compomics.util.experiment.identification.protein_sequences.digestion.iterators	This package contains implementations of the SequenceIterator interface.

Class	Description
ExtendedPeptide	This class packages together a peptide, its fixed modifications and its position on the protein.
IteratorFactory	The iterator goes through a sequence and lists possible peptides with their fixed modifications.
PeptideDraft	Draft of a peptide used during protein sequence digestion.
ProteinIteratorUtils	This class contains utilities used during the iteration of protein sequences.
SequenceIterator	Interface for an iterator returning peptides along a protein sequence.