Uses of Enum
com.compomics.util.experiment.identification.psm_scoring.PsmScore

Packages that use PsmScore

Package	Description
com.compomics.util.experiment.identification.psm_scoring	Main PSM scoring class.

Uses of PsmScore in com.compomics.util.experiment.identification.psm_scoring

Methods in com.compomics.util.experiment.identification.psm_scoring that return PsmScore

Modifier and Type	Method	Description
static PsmScore	PsmScore.getScore(int scoreIndex)	Returns the PSM score of the given index.
static PsmScore	PsmScore.getScore(String scoreName)	Returns the PSM score of the given name.
static PsmScore	PsmScore.valueOf(String name)	Returns the enum constant of this type with the specified name.
static PsmScore[]	PsmScore.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in com.compomics.util.experiment.identification.psm_scoring with parameters of type PsmScore

Modifier and Type	Method	Description
double	PsmScoresEstimator.getScore(Peptide peptide, int peptideCharge, String spectrumFile, String spectrumTitle, Spectrum spectrum, IdentificationParameters identificationParameters, SpecificAnnotationParameters specificAnnotationParameters, ModificationParameters modificationParameters, SequenceProvider sequenceProvider, SequenceMatchingParameters modificationSequenceMatchingParameters, PeptideSpectrumAnnotator peptideSpectrumAnnotator, PsmScore psmScore)	Scores the match between the given peptide and spectrum using the given score.