Uses of Enum
com.compomics.util.experiment.identification.psm_scoring.PsmScore
Packages that use PsmScore
Package
Description
Main PSM scoring class.
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Uses of PsmScore in com.compomics.util.experiment.identification.psm_scoring
Methods in com.compomics.util.experiment.identification.psm_scoring that return PsmScoreModifier and TypeMethodDescriptionstatic PsmScorePsmScore.getScore(int scoreIndex) Returns the PSM score of the given index.static PsmScoreReturns the PSM score of the given name.static PsmScoreReturns the enum constant of this type with the specified name.static PsmScore[]PsmScore.values()Returns an array containing the constants of this enum type, in the order they are declared.Methods in com.compomics.util.experiment.identification.psm_scoring with parameters of type PsmScoreModifier and TypeMethodDescriptiondoublePsmScoresEstimator.getScore(Peptide peptide, int peptideCharge, String spectrumFile, String spectrumTitle, Spectrum spectrum, IdentificationParameters identificationParameters, SpecificAnnotationParameters specificAnnotationParameters, ModificationParameters modificationParameters, SequenceProvider sequenceProvider, SequenceMatchingParameters modificationSequenceMatchingParameters, PeptideSpectrumAnnotator peptideSpectrumAnnotator, PsmScore psmScore) Scores the match between the given peptide and spectrum using the given score.