Uses of Enum
com.compomics.util.experiment.identification.spectrum_annotation.AnnotationParameters.IntensityThresholdType

Packages that use AnnotationParameters.IntensityThresholdType

Package	Description
com.compomics.util.experiment.identification.spectrum_annotation	Classes used for ms2 spectrum annotation.
com.compomics.util.experiment.mass_spectrometry.spectra	Experiment classes related to spectra.

Uses of AnnotationParameters.IntensityThresholdType in com.compomics.util.experiment.identification.spectrum_annotation

Methods in com.compomics.util.experiment.identification.spectrum_annotation that return AnnotationParameters.IntensityThresholdType

Modifier and Type	Method	Description
AnnotationParameters.IntensityThresholdType	AnnotationParameters.getIntensityThresholdType()	Returns the intensity threshold type.
static AnnotationParameters.IntensityThresholdType	AnnotationParameters.IntensityThresholdType.valueOf(String name)	Returns the enum constant of this type with the specified name.
static AnnotationParameters.IntensityThresholdType[]	AnnotationParameters.IntensityThresholdType.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in com.compomics.util.experiment.identification.spectrum_annotation with parameters of type AnnotationParameters.IntensityThresholdType

Modifier and Type	Method	Description
void	AnnotationParameters.setIntensityThresholdType(AnnotationParameters.IntensityThresholdType intensityThresholdType)	Sets the intensity threshold type.

Uses of AnnotationParameters.IntensityThresholdType in com.compomics.util.experiment.mass_spectrometry.spectra

Methods in com.compomics.util.experiment.mass_spectrometry.spectra with parameters of type AnnotationParameters.IntensityThresholdType

Modifier and Type	Method	Description
static double	SpectrumUtil.getIntensityLimit(Spectrum spectrum, AnnotationParameters.IntensityThresholdType intensityThresholdType, double thresholdValue)	Returns the limit in intensity according to the given threshold.
static double[][]	SpectrumUtil.getPeaksAboveIntensityThreshold(Spectrum spectrum, AnnotationParameters.IntensityThresholdType intensityThresholdType, double thresholdValue)	Returns the peaks above intensity threshold as an array of double (mz, intensity).