Uses of Class
com.compomics.util.experiment.identification.spectrum_annotation.SpectrumAnnotator

Packages that use SpectrumAnnotator

Package	Description
com.compomics.util.experiment.identification.spectrum_annotation	Classes used for ms2 spectrum annotation.
com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators	This package contains implementations of the SpectrumAnnotator allowing the annotation of all ions.

Uses of SpectrumAnnotator in com.compomics.util.experiment.identification.spectrum_annotation

Methods in com.compomics.util.experiment.identification.spectrum_annotation with parameters of type SpectrumAnnotator

Modifier and Type	Method	Description
SpecificAnnotationParameters	AnnotationParameters.getSpecificAnnotationParameters(String spectrumFile, String spectrumTitle, SpectrumIdentificationAssumption spectrumIdentificationAssumption, ModificationParameters modificationParameters, SequenceProvider sequenceProvider, SequenceMatchingParameters modificationSequenceMatchingParameters, SpectrumAnnotator spectrumAnnotator)	Returns the annotation preferences specific to a spectrum and an identification assumption.

Uses of SpectrumAnnotator in com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators

Subclasses of SpectrumAnnotator in com.compomics.util.experiment.identification.spectrum_annotation.spectrum_annotators

Modifier and Type	Class	Description
class	PeptideSpectrumAnnotator	Annotates a spectrum with peptide fragments.
class	TagSpectrumAnnotator	Annotates a spectrum with information from a tag.