Package com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators

Class ReporterIonAnnotator

java.lang.Object

com.compomics.util.experiment.identification.spectrum_annotation.simple_annotators.ReporterIonAnnotator

public class ReporterIonAnnotator
extends Object

Annotator for reporter ions.

Author:

Marc Vaudel

Constructor Summary

Constructors

Constructor	Description
ReporterIonAnnotator()	Empty default constructor
ReporterIonAnnotator(ReporterIon[] reporterIons)	Constructor.

Method Summary

Modifier and Type	Method	Description
ArrayList<IonMatch>	getIonMatches(SpectrumIndex spectrumIndex)	Returns the ions matched in the given spectrum.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ReporterIonAnnotator

public ReporterIonAnnotator()

Empty default constructor

ReporterIonAnnotator

public ReporterIonAnnotator(ReporterIon[] reporterIons)

Constructor.

Parameters:

reporterIons - array of the reporter ions to annotate

Method Details

getIonMatches

public ArrayList<IonMatch> getIonMatches(SpectrumIndex spectrumIndex)

Returns the ions matched in the given spectrum.

Parameters:

spectrumIndex - the index of the spectrum

Returns:

the ions matched in the given spectrum