Package com.compomics.util.experiment.io.mass_spectrometry.apl

Class AplFileWriter

java.lang.Object

com.compomics.util.experiment.io.mass_spectrometry.apl.AplFileWriter

All Implemented Interfaces:

AutoCloseable

public class AplFileWriter
extends Object
implements AutoCloseable

This class writes spectrum files in Andromeda Peak List (APL) format.

Author:

Marc Vaudel

Constructor Summary

Constructors

Constructor	Description
AplFileWriter()	Empty default constructor.
AplFileWriter(File destinationFile)	Constructor.

Method Summary

Modifier and Type	Method	Description
void	close()
void	writeSpectrum(String spectrumTitle, Spectrum spectrum, FragmentationMethod fragmentationMethod, int charge)	Writes the given spectrum to the file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AplFileWriter

public AplFileWriter()

Empty default constructor.

AplFileWriter

public AplFileWriter(File destinationFile)

Constructor.

Parameters:

destinationFile - The file where to write.

Method Details

writeSpectrum

public void writeSpectrum(String spectrumTitle,
 Spectrum spectrum,
 FragmentationMethod fragmentationMethod,
 int charge)

Writes the given spectrum to the file.

Parameters:

spectrumTitle - The title of the spectrum to write.

spectrum - The spectrum to write.

fragmentationMethod - The fragmentation method.

charge - The charge to consider for this spectrum.

close

public void close()

Specified by:

close in interface AutoCloseable