Package com.compomics.util.experiment.io.mass_spectrometry.cms

Class CmsFileWriter

java.lang.Object

com.compomics.util.experiment.io.mass_spectrometry.cms.CmsFileWriter

All Implemented Interfaces:

AutoCloseable

public class CmsFileWriter
extends Object
implements AutoCloseable

Writer for cms files.

Author:

Marc Vaudel, Harald Barsnes

Field Summary

Fields

Modifier and Type	Field	Description
static final int	HEADER_LENGTH	The length of the file header.

Constructor Summary

Constructors

Constructor	Description
CmsFileWriter(File outputFile)	Constructor.

Method Summary

Modifier and Type	Method	Description
void	addSpectrum(String spectrumTitle, Spectrum spectrum)	Adds a spectrum to the file.
void	close()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

HEADER_LENGTH

public static final int HEADER_LENGTH

The length of the file header.

Constructor Details

CmsFileWriter

public CmsFileWriter(File outputFile)
              throws FileNotFoundException,
IOException

Constructor.

Parameters:

outputFile - the output file.

Throws:

FileNotFoundException - Exception thrown if the output file was not found.

IOException - Exception thrown if an error occurred while attempting to write to output file.

Method Details

addSpectrum

public void addSpectrum(String spectrumTitle,
 Spectrum spectrum)
                 throws IOException

Adds a spectrum to the file.

Parameters:

spectrumTitle - The title of the spectrum to add.

spectrum - The spectrum to add.

Throws:

IOException - Exception thrown if an error occurred while attempting to write to output file.

close

public void close()
           throws IOException

Specified by:

close in interface AutoCloseable

Throws:

IOException