Package com.compomics.util.experiment.io.mass_spectrometry.ms2

Class Ms2FileWriter

java.lang.Object

com.compomics.util.experiment.io.mass_spectrometry.ms2.Ms2FileWriter

All Implemented Interfaces:

AutoCloseable

public class Ms2FileWriter
extends Object
implements AutoCloseable

This class writes spectrum files in MS2 format.

Author:

Marc Vaudel, Harald Barsnes

Constructor Summary

Constructors

Constructor	Description
Ms2FileWriter()	Empty default constructor.
Ms2FileWriter(File destinationFile)	Constructor.

Method Summary

Modifier and Type	Method	Description
void	close()
void	writeHeader()	Writes the header of the file.
void	writeSpectrum(Spectrum spectrum, int scanNumber)	Writes the given spectrum in ms2 format.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Ms2FileWriter

public Ms2FileWriter()

Empty default constructor.

Ms2FileWriter

public Ms2FileWriter(File destinationFile)

Constructor.

Parameters:

destinationFile - The file where to write.

Method Details

writeHeader

public void writeHeader()

Writes the header of the file.

writeSpectrum

public void writeSpectrum(Spectrum spectrum,
 int scanNumber)

Writes the given spectrum in ms2 format.

Parameters:

spectrum - The spectrum to write.

scanNumber - the scan number

close

public void close()

Specified by:

close in interface AutoCloseable