Uses of Enum
com.compomics.util.experiment.mass_spectrometry.FragmentationMethod

Packages that use FragmentationMethod

Package	Description
com.compomics.util.experiment.io.mass_spectrometry.apl	Classes for the handling of Andromeda peak list (apl) files.
com.compomics.util.experiment.mass_spectrometry	Experiment classes related to mass spectrometry.
com.compomics.util.parameters.identification.tool_specific	Parameters settings for the search algorithms.

Uses of FragmentationMethod in com.compomics.util.experiment.io.mass_spectrometry.apl

Methods in com.compomics.util.experiment.io.mass_spectrometry.apl with parameters of type FragmentationMethod

Modifier and Type	Method	Description
void	AplFileWriter.writeSpectrum(String spectrumTitle, Spectrum spectrum, FragmentationMethod fragmentationMethod, int charge)	Writes the given spectrum to the file.

Uses of FragmentationMethod in com.compomics.util.experiment.mass_spectrometry

Methods in com.compomics.util.experiment.mass_spectrometry that return FragmentationMethod

Modifier and Type	Method	Description
static FragmentationMethod	FragmentationMethod.valueOf(String name)	Returns the enum constant of this type with the specified name.
static FragmentationMethod[]	FragmentationMethod.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Uses of FragmentationMethod in com.compomics.util.parameters.identification.tool_specific

Methods in com.compomics.util.parameters.identification.tool_specific that return FragmentationMethod

Modifier and Type	Method	Description
FragmentationMethod	AndromedaParameters.getFragmentationMethod()	Returns the fragmentation method used.

Methods in com.compomics.util.parameters.identification.tool_specific with parameters of type FragmentationMethod

Modifier and Type	Method	Description
void	AndromedaParameters.setFragmentationMethod(FragmentationMethod fragmentationMethod)	Sets the fragmentation method used.