Uses of Package
com.compomics.util.experiment.mass_spectrometry

Packages that use com.compomics.util.experiment.mass_spectrometry

Package	Description
com.compomics.util.experiment.identification.features	Classes for the generation of identification features.
com.compomics.util.experiment.identification.filtering	Classes for the filtering of identification objects.
com.compomics.util.experiment.io.identification	Experiment identification classes.
com.compomics.util.experiment.io.identification.idfilereaders	Experiment classes related to reading search engine files.
com.compomics.util.experiment.io.identification.writers	Writer for identification results.
com.compomics.util.experiment.io.mass_spectrometry	Classes for the handling of mass spectrometry files.
com.compomics.util.experiment.io.mass_spectrometry.apl	Classes for the handling of Andromeda peak list (apl) files.
com.compomics.util.experiment.io.mass_spectrometry.cms	Classes for the handling of Compomics mass spectrometry (cms) files.
com.compomics.util.experiment.mass_spectrometry	Experiment classes related to mass spectrometry.
com.compomics.util.gui.modification	PTM GUI dialogs.
com.compomics.util.parameters.identification.tool_specific	Parameters settings for the search algorithms.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.experiment.identification.features

Class	Description
SpectrumProvider	Interface for objects providing spectra.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.experiment.identification.filtering

Class	Description
SpectrumProvider	Interface for objects providing spectra.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.experiment.io.identification

Class	Description
SpectrumProvider	Interface for objects providing spectra.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.experiment.io.identification.idfilereaders

Class	Description
SpectrumProvider	Interface for objects providing spectra.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.experiment.io.identification.writers

Class	Description
SpectrumProvider	Interface for objects providing spectra.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.experiment.io.mass_spectrometry

Class	Description
SpectrumProvider	Interface for objects providing spectra.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.experiment.io.mass_spectrometry.apl

Class	Description
FragmentationMethod	Enum for the different fragmentation methods.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.experiment.io.mass_spectrometry.cms

Class	Description
SpectrumProvider	Interface for objects providing spectra.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.experiment.mass_spectrometry

Class	Description
FragmentationMethod	Enum for the different fragmentation methods.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.gui.modification

Class	Description
SpectrumProvider	Interface for objects providing spectra.

Classes in com.compomics.util.experiment.mass_spectrometry used by com.compomics.util.parameters.identification.tool_specific

Class	Description
FragmentationMethod	Enum for the different fragmentation methods.